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Learn, Apply, Discover

Whether you're just getting started or going deep, explore how our approach can help you grow your research with confidence.

How Tesorai Works

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How Tesorai Works

How Tesorai Search gets more identifications without cutting corners on error control — the scoring model, the FDR methodology, and how it handles both DDA and DIA, in one place.

Education

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FDR, Match-Between-Runs, and Immunopeptidomics: A Plain-Language Guide

Three concepts that determine whether you can trust your proteomics results — and what to look for when evaluating any search engine.

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What is Proteomics? A guide to Mass Spectrometry, Search Engines, and Data Acquisition

From how proteins are measured to why the software that analyzes the data matters as mush as the instrument that generates it.

Case Studies

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Building a Pan-Cancer Atlas of Therapeutic T Cell Targets

How NYU researchers used large-scale immunopeptidomics and AI-enabled peptide identification to identify 28,446 tumor-specific antigens and accelerate therapeutic target discovery.

Guangyuan (Frank) Li, PhD, NYU Langone Health
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Revealing the Functional Landscape of RNA Editing

How UCSF researchers used deep proteomics and AI-enabled peptide identification to map 7.998 protien-verified RNA editing sites - an 18-fold increase over previously reported evidence.

Jack Moen, PhD, UCSF

Publications

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Publication

Publication

Single-cell foundation models benefit from cross-modal training: adding proteomics data beats parameter scaling

Fine-tuning a single-cell foundation model on proteomics data matches or beats scaling to models over 40x larger — showing multimodal training can outperform parameter scaling alone.

Publication

Publication

Functional diversification of the cephalopod proteome by RNA-editing

Our collaborators at UCSF have deposited a preprint on bioRxiv describing how RNA editing reshapes the cephalopod proteome, using Tesorai to characterize thousands of recoding events at the peptide level.

The Publication Bottleneck: Lossy compression in the Age of Omics

Valuable biological information is lost in the practice of publishing our work.

Differential proteomics: Unpacking the protein table

The "protein table" behind differential analysis hides aggregation choices that can quietly shape your results.

Development of a large pretrained model for Tesorai Search

Peter's lecture at MaxQuant Summer School 2024 describing the principles underlying how Search was built.

Building Tesorai - an interview with Peter

Tanja Janko with the ASEF spoke with Peter about the creation of Tesorai and the future of molecular analysis.

Learning Hub

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Demo video

See Tesorai Chat in action and watch examples of how it can make data visualization faster and easier.

Get started

Learn how to set up your first analysis with Tesorai Search. This guide walks you through uploading your data, running a search, and reviewing the results.