Scientific poster
Enhanced protein identification and quantification improve differential expression analysis
Accurate protein identification and quantification are central to extracting meaningful biological insights from mass spectrometry (MS)-based proteomics.
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Technical explainers, publications, guides, and perspectives on proteomics data analysis and biological discovery.
Publications
Single-cell foundation models benefit from cross-modal training: adding proteomics data beats parameter scaling
Fine-tuning a single-cell foundation model on proteomics data matches or beats scaling to models over 40x larger — showing multimodal training can outperform parameter scaling alone.
Building a Pan-Cancer Atlas of Therapeutic T Cell Targets
How NYU researchers used large-scale immunopeptidomics and AI-enabled peptide identification to identify 28,446 tumor-specific antigens and accelerate therapeutic target discovery.
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